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  Single-cell sample list ( 337)  
Accession number DRA001287  
Dataset title scRNA-Seq analysis of a series of lung adenocarcinoma cell lines. We analyzed a More ...  
Article abstract We analyze a total of 336 single-cell RNA-Seq libraries from seven cell lines. T More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 472)  
Accession number DRA002399  
Dataset title The goal of these libraries is to find transcriptome signatures of the different More ...  
Article abstract We used a transgenic HeLa cell line that reports cell cycle phases through fluor More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 255)  
Accession number DRA002730  
Dataset title scRNA-seqeq analysis of a series of lung adenocarcinoma cell lines. We analyzed More ...  
Article abstract We analyze a total of 336 single-cell RNA-Seq libraries from seven cell lines. T More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 96)  
Accession number E-MTAB-2512  
Dataset title Demonstrate production of the steroid pregnenolone by Th2 cells in vitro, and in More ...  
Article abstract T helper 2 (Th2) cells regulate helminth infections, allergic disorders, tumor i More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 869)  
Accession number E-MTAB-2600  
Dataset title We sequence mRNA from single mESCs from three culture conditions: serum + LIF, 2 More ...  
Article abstract Embryonic stem cell (ESC) culture conditions are important for maintaining long- More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 288)  
Accession number E-MTAB-2805  
Dataset title Performed scRNA-seq experiment on mESC that were stained with Hoechst 33342 and More ...  
Article abstract Recent technical developments have enabled the transcriptomes of hundreds of cel More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 341)  
Accession number E-MTAB-3346  
Dataset title Sequenced single mTEC transcriptomes to explore gene expression heterogeneity an More ...  
Article abstract Expression of tissue-restricted self antigens (TRAs) in medullary thymic epithel More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 20)  
Accession number E-MTAB-3543  
Dataset title Mouse splenic na├»ve T cells were activated and polarized towards the Th2 subtype More ...  
Article abstract We perform ex vivo single-cell RNA-sequencing of CD4+ T cells during a mouse mod More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 272)  
Accession number E-MTAB-3857  
Dataset title Single-cell RNA-seq of CD4+ T lymphocytes from mice infected with Salmonella typ More ...  
Article abstract We developed TraCeR, a computational method to reconstruct full-length, paired T More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 1529)  
Accession number E-MTAB-3929  
Dataset title Single-cell RNA-seq of 1,529 cells obtained from 88 human preimplantation embryo More ...  
Article abstract Mouse studies have been instrumental in forming our current understanding of ear More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 768)  
Accession number E-MTAB-4026  
Dataset title Single-cell RNA sequencing of mouse embryos with Tal1 (Scl) knockout  
Article abstract In mammals, specification of the three major germ layers occurs during gastrulat More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 1205)  
Accession number E-MTAB-4079  
Dataset title RNA-seq of coding RNA from single cells derived from mouse embryos  
Article abstract In mammals, specification of the three major germ layers occurs during gastrulat More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 287)  
Accession number E-MTAB-4619  
Dataset title Investiagted the heterogeneity of CD4+ Th2 cells during infection response. Inje More ...  
Article abstract We perform ex vivo single-cell RNA-sequencing of CD4+ T cells during a mouse mod More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 7)  
Accession number E-MTAB-5060  
Dataset title Whole-islet RNA-sequencing analysis of human pancreas from healthy individuals a More ...  
Article abstract Hormone-secreting cells within pancreatic islets of Langerhans play important ro More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 3514)  
Accession number E-MTAB-5061  
Dataset title Single-cell RNA-seq analysis of human pancreas from healthy individuals and type More ...  
Article abstract Hormone-secreting cells within pancreatic islets of Langerhans play important ro More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 480)  
Accession number GSE29087  
Dataset title 92 single cells (48 mouse ES cells, 44 mouse embryonic fibroblasts and 4 negativ More ...  
Article abstract Our understanding of the development and maintenance of tissues has been greatly More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 124)  
Accession number GSE36552  
Dataset title Transcriptome of 124 individual cells from human pre-implantation embryos and hu More ...  
Article abstract Measuring gene expression in individual cells is crucial for understanding the g More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 121)  
Accession number GSE38495  
Dataset title We generated RNA-Seq libraries for dilution series of MAQC reference RNA and mou More ...  
Article abstract Genome-wide transcriptome analyses are routinely used to monitor tissue-, diseas More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 121)  
Accession number GSE38495  
Dataset title We generated RNA-Seq libraries for dilution series of MAQC reference RNA and mou More ...  
Article abstract Genome-wide transcriptome analyses are routinely used to monitor tissue-, diseas More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table  
 
  Single-cell sample list ( 77)  
Accession number GSE42268  
Dataset title RNA-seq by illumina TruSeq, KAPA library preparation kit, single-cell Quartz-Seq More ...  
Article abstract Development of a highly reproducible and sensitive single-cell RNA sequencing (R More ...  
Run metadata Click to download study's detailed metadata (txt formatted)  
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress]  
PubMed record Show PubMed record  
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted  
PCA   T-SNE
PCA matrix Click to download PCA matrix  
Unmapped reads annoation microbial contamination (bacteria, archaea and viruses)  
Reads Annotation Chart   Gene body coverage
Search gene expression (FPKM) Search for a gene in FPKM exp. table