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Single-cell sample list (337)  
Accession number DRA001287 
Dataset title scRNA-Seq analysis of a series of lung adenocarcinoma cell lines. We analyzed a More ... 
Article abstract We analyze a total of 336 single-cell RNA-Seq libraries from seven cell lines. T More ... 
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Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
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Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
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Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (472)  
Accession number DRA002399 
Dataset title The goal of these libraries is to find transcriptome signatures of the different More ... 
Article abstract We used a transgenic HeLa cell line that reports cell cycle phases through fluor More ... 
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Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
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Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (255)  
Accession number DRA002730 
Dataset title scRNA-seqeq analysis of a series of lung adenocarcinoma cell lines. We analyzed More ... 
Article abstract We analyze a total of 336 single-cell RNA-Seq libraries from seven cell lines. T More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (96)  
Accession number E-MTAB-2512 
Dataset title Demonstrate production of the steroid pregnenolone by Th2 cells in vitro, and in More ... 
Article abstract T helper 2 (Th2) cells regulate helminth infections, allergic disorders, tumor i More ... 
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Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (869)  
Accession number E-MTAB-2600 
Dataset title We sequence mRNA from single mESCs from three culture conditions: serum + LIF, 2 More ... 
Article abstract Embryonic stem cell (ESC) culture conditions are important for maintaining long- More ... 
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Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (288)  
Accession number E-MTAB-2805 
Dataset title Performed scRNA-seq experiment on mESC that were stained with Hoechst 33342 and More ... 
Article abstract Recent technical developments have enabled the transcriptomes of hundreds of cel More ... 
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Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (341)  
Accession number E-MTAB-3346 
Dataset title Sequenced single mTEC transcriptomes to explore gene expression heterogeneity an More ... 
Article abstract Expression of tissue-restricted self antigens (TRAs) in medullary thymic epithel More ... 
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Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (20)  
Accession number E-MTAB-3543 
Dataset title Mouse splenic na├»ve T cells were activated and polarized towards the Th2 subtype More ... 
Article abstract We perform ex vivo single-cell RNA-sequencing of CD4+ T cells during a mouse mod More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (272)  
Accession number E-MTAB-3857 
Dataset title Single-cell RNA-seq of CD4+ T lymphocytes from mice infected with Salmonella typ More ... 
Article abstract We developed TraCeR, a computational method to reconstruct full-length, paired T More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (1529)  
Accession number E-MTAB-3929 
Dataset title Single-cell RNA-seq of 1,529 cells obtained from 88 human preimplantation embryo More ... 
Article abstract Mouse studies have been instrumental in forming our current understanding of ear More ... 
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Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (768)  
Accession number E-MTAB-4026 
Dataset title Single-cell RNA sequencing of mouse embryos with Tal1 (Scl) knockout 
Article abstract In mammals, specification of the three major germ layers occurs during gastrulat More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (1205)  
Accession number E-MTAB-4079 
Dataset title RNA-seq of coding RNA from single cells derived from mouse embryos 
Article abstract In mammals, specification of the three major germ layers occurs during gastrulat More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (287)  
Accession number E-MTAB-4619 
Dataset title Investiagted the heterogeneity of CD4+ Th2 cells during infection response. Inje More ... 
Article abstract We perform ex vivo single-cell RNA-sequencing of CD4+ T cells during a mouse mod More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (7)  
Accession number E-MTAB-5060 
Dataset title Whole-islet RNA-sequencing analysis of human pancreas from healthy individuals a More ... 
Article abstract Hormone-secreting cells within pancreatic islets of Langerhans play important ro More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (3514)  
Accession number E-MTAB-5061 
Dataset title Single-cell RNA-seq analysis of human pancreas from healthy individuals and type More ... 
Article abstract Hormone-secreting cells within pancreatic islets of Langerhans play important ro More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (480)  
Accession number GSE29087 
Dataset title 92 single cells (48 mouse ES cells, 44 mouse embryonic fibroblasts and 4 negativ More ... 
Article abstract Our understanding of the development and maintenance of tissues has been greatly More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (124)  
Accession number GSE36552 
Dataset title Transcriptome of 124 individual cells from human pre-implantation embryos and hu More ... 
Article abstract Measuring gene expression in individual cells is crucial for understanding the g More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (121)  
Accession number GSE38495 
Dataset title We generated RNA-Seq libraries for dilution series of MAQC reference RNA and mou More ... 
Article abstract Genome-wide transcriptome analyses are routinely used to monitor tissue-, diseas More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (68)  
Accession number GSE41265 
Dataset title RNA seq libraries from 18 single cells, 3 populations of 10,000 cells, and 2 zer More ... 
Article abstract Recent molecular studies have shown that, even when derived from a seemingly hom More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table 
 
Single-cell sample list (77)  
Accession number GSE42268 
Dataset title RNA-seq by illumina TruSeq, KAPA library preparation kit, single-cell Quartz-Seq More ... 
Article abstract Development of a highly reproducible and sensitive single-cell RNA sequencing (R More ... 
Run metadata Click to download study's detailed metadata (txt formatted) 
Data repository Link to to the public data repository [GEO - DDBJ - ArrayExpress] 
PubMed record Show PubMed record 
Authors provided files Click to download author's files (expression table, count info, etc.) .gz formatted 
PCA                 t-SNE                                                                              
PCA matrix Click to download PCA matrix 
Search gene expression (FPKM) Search for a gene in FPKM exp. table